2013 Publication List

Publications Using Results Obtained With Imaris

Peer reviewed publications between 1990 and 2013 that are using Imaris in one of its configurations. If you know of any paper that is missing on this list please report it to publications@bitplane.com.

August

TitleJournalAuthorResearchCategoryArticle
Small human sperm vacuoles observed under high magnification are pocket-like nuclear concavities linked to chromatin condensation failure Reproductive BioMedicine Online, 2013. 27(2): p. 201-211 Boitrelle, F., et al. Reproductive Biology 3D-Visualization
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Quantitative Changes in Perifoveal Capillary Networks in Patients With Vascular Comorbidities Invest. Ophthalmol. Vis. Sci., 2013. 54(8): p. 5175-5185 Chan, G., et al. Ophthalmology 3D-Visualization
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APP interacts with LRP4 and agrin to coordinate the development of the neuromuscular junction in mice eLife Sci, 2013. 2(0) Choi, H.Y., et al. Genetics  3D-Visualization
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Clearance of Pseudomonas aeruginosa Foreign-Body Biofilm Infections through Reduction of the Cyclic Di-GMP Level in the Bacteria Infect. Immun., 2013. 81(8): p. 2705-2713 Christensen, L.D., et al. Biofilms 3D-Visualization
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Postnatal Refinement of Auditory Hair Cell Planar Polarity Deficits Occurs in the Absence of Vangl2 J. Neurosci., 2013. 33(35): p. 14001-14016. Copley, C.O., et al. Otolaryngology 3D-Visualization
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Fate of TLR-1/TLR-2 agonist functionalised pDNA nanoparticles upon deposition at the human bronchial epithelium in vitro J.Nanobiotech. 2013. 11(1): p. 1-10 Heuking, S., et al. Pharmaceutical Sciences 3D-Visualization
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Environmental Dissolved Organic Matter Governs Biofilm Formation and Subsequent Linuron Degradation Activity of a Linuron-Degrading Bacterial Consortium Appl. Envir. Microbiol., 2013. 79(15): p. 4534-4542 Horemans, B., et al. Environmental Sciences 3D-Visualization
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The Late Endosomal HOPS Complex Anchors Active G-Protein Signaling Essential for Pathogenesis in Magnaporthe oryzae PLoS Pathog, 2013. 9(8) Ramanujam, R., et al. Pathology 3D-Visualization
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Endocardial endothelium is a key determinant of force-frequency relationship in rat ventricular myocardium J Appl Physiol, 2013. 115(3): p. 383-393 Shen, X., et al. Antimicrobial Biofilms 3D-Visualization
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Elimination of Aspergillus fumigatus conidia from the airways of mice with allergic airway inflammation Respiratory Research, 2013. 14(1): p. 1-13 Shevchenko, M., et al. Immunology  3D-Visualization
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Role of calcineurin and actin dynamics in regulated secretion of microneme proteins in Plasmodium falciparum merozoites during erythrocyte invasion Cellular Microbiology Singh, S., K.R. More, and C.E. Chitnis Genetic Engineering 3D-Visualization
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Perivascular Fibroblasts Form the Fibrotic Scar after Contusive Spinal Cord Injury J. Neurosci., 2013. 33(34): p. 13882-13887 Soderblom, C., et al. Neurological Surgery 3D-Visualization
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A pair of identified giant visual projection neurons demonstrates rhythmic activities before eclosion Neuroscience Letters, 2013. 550(0): p. 156-161 Yan, Y., et al. Neuroscience  3D-Visualization
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Role of PFKFB3-Driven Glycolysis in Vessel Sprouting Cell, 2013. 154(3): p. 651-663. De Bock, K., et al. Angiogenesis 3D Visualization
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Tubular endocytosis drives remodelling of the apical surface during epithelial morphogenesis in Drosophila Nat Commun, 2013. 4. Fabrowski, P., et al. Developmental Biology 3D Visualization
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Homeostatic and injury-induced microglia behavior in the aging brain Aging Cell, 2013 Hefendehl, J.K., et al., . Cellular Neurobiology 3D Visualization
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Cell-type specific increases in female hamster nucleus accumbens spine density following female sexual experience Brain Structure and Function, 2013: p. 1-11 Staffend, N., et al. Neuroscience  3D Visualization
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Synaptic Inputs Compete during Rapid Formation of the Calyx of Held: A New Model System for Neural Development J. Neuroscience, 2013. 33(32): p. 12954-12969 Holcomb, P.S., et al. Neuroscience 3D Visualization
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Cell density-induced changes in lipid composition and intracellular trafficking Cellular and Molecular Life Sciences, 2013: p. 1-20 Kavaliauskiene, S., et al. Cancer Research  3D Visualization
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The Effects of Tenascin C Knockdown on Trabecular Meshwork Outflow Resistance Invest. Ophthalmol. Vis. Sci., 54(8): p. 5613-5623 Keller, K.E., et al. Ophthalmology 3D Visualization
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ATG5 is induced by DNA-damaging agents and promotes mitotic catastrophe independent of autophagy Nat Commun, 2013. 4  Maskey, D., et al. Pharmacology 3D Visualization
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Imaging of hepatitis C virus infection in liver grafts after liver transplantation J. Hepatology, 2013. 59(2): p. 271-278 Mensa, L., et al. Hepatology 3D Visualization
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A tuberous sclerosis complex signalling node at the peroxisome regulates mTORC1 and autophagy in response to ROS Nat Cell Biol, 2013 Zhang, J., et al. Cancer Research  3D Visualization
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Additional 71 Publications

July

TitleJournalAuthorResearchCategoryArticle
The DSF Quorum Sensing System Controls the Positive Influence of Stenotrophomonas maltophilia on Plant PLoS One, 2013. 8(7) Alavi, P., et al. Environmental Biotechnology  3D-Visualization
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Adaptive phenotype of microglial cells during the normal postnatal development of the somatosensory “Barrel” cortex Glia Arnoux, I., et al. Neurobiology 3D-Visualization
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Interaction of smoothened with integrin-linked kinase in primary cilia mediates Hedgehog signalling EMBO Rep Barakat, B., et al. Cancer Research 3D-Visualization
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Simultaneous live-imaging of peroxisomes and the ER in plant cells suggests contiguity but no luminal continuity between the two organelles Front Physiol, 2013. 4 Barton, K., N. Mathur, and J. Mathur Plant Development 3D-Visualization
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Renal Cells Express Different Forms of Vimentin: The Independent Expression Alteration of these Forms is Important in Cell Resistance to Osmotic Stress and Apoptosis PLoS One, 2013. 8(7) Buchmaier, B.S., et al. Nephrology 3D-Visualization
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Granule Cell Ascending Axon Excitatory Synapses onto Golgi Cells Implement a Potent Feedback Circuit in the Cerebellar Granular Layer J. Neurosci., 2013. 33(30): p. 12430-12446 Cesana, E., et al. Neuroscience 3D-Visualization
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Crosstalk of Ras and Rho: activation of RhoA abates Kras-induced liver tumorigenesis in transgenic zebrafish models Oncogene, 2013 Chew, T.W., et al. Developmental Biology 3D-Visualization
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Cell Stress Promotes the Association of Phosphorylated HspB1 with F-Actin PLoS One, 2013. 8(7) Clarke, J.P. and K.M. Mearow Neuroscience 3D-Visualization
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Inhibition of Notch signaling induces extensive intussusceptive neo-angiogenesis by recruitment of mononuclear cells Angiogenesis, 2013: p. 1-17 Dimova, I., et al. Angiogenesis  3D-Visualization
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Novel Phenotypic Fluorescent Three-Dimensional Platforms for High-throughput Drug Screening and Personalized Chemotherapy J Cancer, 2013. 4(5): p. 402-15. Fang, C., et al. Cancer Research 3D-Visualization
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Bininda-Emonds, and S. Richter, Unraveling the origin of Cladocera by identifying heterochrony in the developmental sequences of Branchiopoda Frontiers in Zoology, 2013. 10(1): p. 1-20 Fritsch, M., et al. Zoology 3D-Visualization
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Photoreceptor precursors derived from three-dimensional embryonic stem cell cultures integrate and mature within adult degenerate retina Nat Biotech, 2013 Gonzalez-Cordero, A., et al. Genetics 3D-Visualization
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Sources of Structural Autofluorescence in the Human Trabecular Meshwork Invest. Ophthalmol. Vis. Sci., 54(7): 4813-4820 Huang, A.S., et al. Ophthalmology 3D-Visualization
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The Drosophila Platelet-derived Growth Factor and Vascular Endothelial Growth Factor-Receptor Related (Pvr) Protein Ligands Pvf2 and Pvf3 Control Hemocyte Viability and Invasive Migration J. Biol. Chem., 2013. 288(28): p. 20173-20183 Parsons, B. and E. Foley Developmental Biology  3D-Visualization
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Neonatal steroids induce a down-regulation of tenascin-C and elastin and cause a deceleration of the first phase and an acceleration of the second phase of lung alveolarization Histochemistry and Cell Biology, 2013: p. 1-10 Roth-Kleiner, M., et al. Lung Development 3D-Visualization
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The WASH complex, an endosomal Arp2/3 activator, interacts with the Hermansky-Pudlak syndrome complex BLOC-1 and its cargo phosphatidylinositol-4-kinase type II alpha Mol. Biol. Cell, 2013. 24(14): p. 2269-2284. Ryder, P.V., et al. Cell Biology 3D-Visualization
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T Follicular Helper Cell Dynamics in Germinal Centers Science Shulman, Z., et al. Immunology 3D-Visualization
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Morphology of the jaw apparatus in 8 species of Patellogastropoda (Mollusca, Gastropoda) with special reference to Testudinalia tesulata (Lottiidae) Zoomorphology, 2013: p. 1-19 Vortsepneva, E., et al. Zoology  3D-Visualization
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The Phosphatase PP4c Controls Spindle Orientation to Maintain Proliferative Symmetric Divisions in the Developing Neocortex Neuron, 2013. 79(2): p. 254-265 Xie, Y., et al. Neuroscience  3D-Visualization
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Wnt and the Cancer Niche: Paracrine Interactions with Gastrointestinal Cancer Cells Undergoing Asymmetric Cell Division J Cancer, 2013. 4(6): p. 447-457 Xin, H.W., et al. Cancer Research  3D-Visualization
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Micromechanical investigation of open-graded asphalt friction courses’ rutting mechanisms Construction and Building Materials, 2013. 44(0): p. 25-34 Coleri, E., et al. Civil Engineering 3D Visualization
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The zebrafish common cardinal veins develop by a novel mechanism: lumen ensheathment Development, 2013. 140(13): p. 2776-2786 Helker, C.S.M., et al. Developmental Biology 3D Visualization
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Vesicles modulate an actin network for asymmetric spindle positioning Nat Cell Biol, 2013. 15(8): p. 937-947 Holubcová, Z., G. Howard, and M. Schuh Cell Biology 3D Visualization
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Kinesin-5/Eg5 is important for transport of CARTS from the trans-Golgi network to the cell surface J. Cell Biol., 2013. 202(2): p. 241-250 Wakana, Y., et al. Developmental Biology  3D Visualization
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Exosomal pMHC-I complex targets T cell-based vaccine to directly stimulate CTL responses leading to antitumor immunity in transgenic FVBneuN and HLA-A2/HER2 mice and eradicating trastuzumab-resistant tumor in athymic nude mice Breast Cancer Research and Treatment, 140(2): p. 273-284 Wang, L., et al. Cancer Research  3D Visualization
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Misguidance and modulation of axonal regeneration by Stat3 and Rho/ROCK signaling in the transparent optic nerve Cell Death Dis, 2013. 4: Pernet, V., et al. Brain Research 3D Visualization
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Cranial irradiation compromises neuronal architecture in the hippocampus PNAS, 2013. 110(31): p. 12822-12827 Parihar, V.K. and C.L. Limoli Neuroscience 3D Visualization
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Spatial Relationships between GABAergic and Glutamatergic Synapses on the Dendrites of Distinct Types of Mouse Retinal Ganglion Cells across Development PLoS One, 2013. 8(7) Bleckert, A., et al. Neurobiology  3D Visualization
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Seamless Reconstruction of Intact Adult-Born Neurons by Serial End-Block Imaging Reveals Complex Axonal Guidance and Development in the Adult Hippocampus J. Neurosci., 2013. 33(28): p. 11400-11411 Sun, G.J., et al. Neuroscience  3D Visualization
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Collagen-Polymer Guidance of Vessel Network Formation and Stabilization by Endothelial Colony Forming Cells In Vitro Macromolecular Bioscience, 2013 Whittington, C.F., M.C. Yoder, and S.L. Voytik-Harbin Blood Vessel Networks 3D Visualization
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 LRG1 promotes angiogenesis by modulating endothelial TGF-[bgr] signalling Nature, 2013. 499(7458): p. 306-311 Wang, X., et al. Cell Biology 3D Visualization
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An ER-peroxisome tether exerts peroxisome population control in yeast EMBO J Knoblach, B., et al. Cell Biology 3D Visualization
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Millimeter-Sized Neural Building Blocks for 3D Heterogeneous Neural Network Assembly Advanced Healthcare Materials Kato-Negishi, M., et al. Neural Network Fabrication 3D Visualization
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Additional 60 Publications

June

TitleJournalAuthorResearchCategoryArticle
The role of gap junction proteins in the development of neural network functional topology Insect Molecular Biology Anava, S., Y. Saad, and A. Ayali Neural Networks 3D-Visualization
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Dynamics of biofilm formation under different nutrient levels and the effect on biofouling of a reverse osmosis membrane system Biofouling, 2013. 29(3): p. 319-330. Chen, X., et al. Water Desalination 3D-Visualization
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Tetanus Toxin Hc Fragment Induces the Formation of Ceramide Platforms and Protects Neuronal Cells against Oxidative Stress PLoS One, 2013. 8(6). Cubí, R., et al. Molecular Biology 3D-Visualization
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Isolation and Characterization of Current Human Coronavirus Strains in Primary Human Epithelial Cell Cultures Reveal Differences in Target Cell Tropism J. Virol., 2013. 87(11): p. 6081-6090 Dijkman, R., et al. Immunobiology  3D-Visualization
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Calcium Entry and {alpha}-Synuclein Inclusions Elevate Dendritic Mitochondrial Oxidant Stress in Dopaminergic Neurons J. Neurosci., 2013. 33(24): p. 10154-10164 Dryanovski, D.I., et al. Neurobiology  3D-Visualization
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MgF2 nanoparticle-coated teeth inhibit Streptococcus mutans biofilm formation on a tooth model J. Materials Chemistry B, 2013 Eshed, M., et al. Dental Biofilm 3D-Visualization
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Microfiber filtration of lake water: impacts on TEP removal and biofouling development Desalination and Water Treatment, 2013. 51(4-6): p. 1043-1049 Eshel, G., et al. Environmental Sciences 3D-Visualization
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SRF selectively controls tip cell invasive behavior in angiogenesis Development, 2013. 140(11): p. 2321-2333 Franco, C.A., et al. Angiogenesis 3D-Visualization
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A simple cleaning and fluorescent staining protocol for recent and fossil diatom frustules Diatom Research, 2013: p. 1-11. Friedrichs, L., et al. Marine Research 3D-Visualization
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HGF Expressing Stem Cells in Usual Interstitial Pneumonia Originate from the Bone Marrow and Are Antifibrotic PLoS One, 2013. 8(6) Gazdhar, A., et al. Stem Cells  3D-Visualization
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Mitochondrial Dysfunction Is the Focus of Quaternary Ammonium Surfactant Toxicity to Mammalian Epithelial Cells. Antimicrob Agents Chemother., 2013. 57(6): p. 2631-2639 Inacio, A.S., et al. Neuroscience  3D-Visualization
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Biliary epithelial cells play an essential role in the reconstruction of hepatic tissue with a functional bile ductular network Tissue Engineering Part A Katsuda, T., et al. Cancer Research 3D-Visualization
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A high-throughput microfluidic dental plaque biofilm system to visualize and quantify the effect of antimicrobials J. Antimicrob. Chemother. Nance, W.C., et al. Multi-species Biofilms 3D-Visualization
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Coaggregation occurs amongst bacteria within and between biofilms in domestic showerheads Biofouling, 2013. 29(1): p. 53-68 Vornhagen, J., et al. Biofouling 3D-Visualization
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Control of Uterine Microenvironment by Foxp3+ Cells Facilitates Embryo Implantation Front Immunol, 2013. 4 Teles, A., et al. Immunology  3D-Visualization
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Greenamyre, and S.C. Watkins, Automated imaging system for fast quantitation of neurons, cell morphology and neurite morphometry in vivo and in vitro Neurobiology of Disease, 2013. 54(0): p. 158-168 Tapias, V., J.T. Neurobiology 3D-Visualization
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Efficiency of siRNA delivery by lipid nanoparticles is limited by endocytic recycling Nat Biotech Sahay, G., et al. Cancer Research 3D Visualization
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The influence of antiscalants on biofouling of RO membranes in seawater desalination Water Research, 2013. 47(10): p. 3389-3398 Sweity, A., et al. Biofouling  3D-Visualization
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Different Distributions of Epstein-Barr Virus Early and Late Gene Transcripts within Viral Replication Compartments  J. Virol., 2013. 87(12): p. 6693-6699 Sugimoto, A., et al. Virology 3D-Visualization
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 Alterations in c-Myc phenotypes resulting from dynamin-related protein 1 (Drp1)-mediated mitochondrial fission  Cell Death Dis, 2013. 4 Sarin, M., et al. Cancer Research 3D-Visualization
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Laminin {beta}1a controls distinct steps during the establishment of digestive organ laterality Development, 2013. 140(13): p. 2734-2745 Hochgreb-Hagele, T., et al. Developmental Biology 3D Visualization
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Tcf21 regulates the specification and maturation of proepicardial cells.  Development, 2013. 140(11): p. 2409-2421 Tandon, P., et al. Developmental Biology  3D Visualization
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In vitro and computational studies of transdermal perfusion of nanoformulations containing a large molecular weight protein Colloids and Surfaces B: Biointerfaces, 2013. 108(0): p. 271-278 Martins, M., et al. Bioengineering 3D Visualization
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Retrograde transport of protein toxins through the Golgi apparatus Histochemistry and Cell Biology, 2013: p. 1-10 Sandvig, K., et al. Cancer Research  3D Visualization
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Development of on-off spiking in superior paraolivary nucleus neurons of the mouse J Neurophysiol, 2013. 109(11): p. 2691-2704 Felix, R.A., II, et al. Neuroscience 3D Visualization
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Visualizing the effect of dynamin inhibition on annular gap vesicle formation and fission J. Cell Sci., 2013. 126(12): p. 2607-2616 Nickel, B., et al. Cell Biology 3D Visualization
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Type I Interferon Programs Innate Myeloid Dynamics and Gene Expression in the Virally Infected Nervous System PLoS Pathog, 2013. 9(5) Nayak, D., et al. Neurobiology  3D Visualization
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Single-cell juxtacellular transfection and recording technique Pflügers Archiv - European J.Physiology, 2013: p. 1-13 Daniel, J., et al. Neuroscience 3D-Visualization
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Identification of Inter-Organ Vascular Network: Vessels Bridging between Organs PLoS One, 2013. 8(6). Omae, M., et al. Cell Biology 3D Visualization
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LAMP1/CD107a is required for efficient perforin delivery to lytic granules and NK-cell cytotoxicity Blood, 2013. 121(23): p. 4672-4683 Krzewski, K., et al. Immunology 3D Visualization
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Additional 95 Publications

May

TitleJournalAuthorResearchCategoryArticle
Assessment and In Vivo Scoring of Murine Experimental Autoimmune Uveoretinitis Using Optical Coherence Tomography PLoS One, 2013. 8(5) Chu, C.J., et al. Genetics 3D-Visualization
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Extravascular CX3CR1+ Cells Extend Intravascular Dendritic Processes into Intact Central Nervous System Vessel Lumen Microscopy and Microanalysis, 2013. p. 1-1 Barkauskas, D.S., et al. Neurobiology 3D Visualization
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The quantity and quality of dissolved organic matter as supplementary carbon source impacts the pesticide-degrading activity of a triple-species bacterial biofilm Applied Microbiol. & Biotechnology, 1-13 Horemans, B., et al. Environmental Science 3D-Visualization
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Mouse primordial germ cells produce cysts that partially fragment prior to meiosis Development, 2013. 140(10): p. 2075-2081 Lei, L. and A.C. Spradling Embryology 3D-Visualization
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Cerebral microvascular network geometry changes in response to functional stimulation NeuroImage, 2013. 71(0): p. 248-259. Lindvere, L., et al.  Cerebral microvasculature 3D-Visualization
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Regulation of Hepatitis C Virus Replication by Nuclear Translocation of Nonstructural 5A Protein and Transcriptional Activation of Host Genes J. Virol., 2013. 87 (10): p. 5523-5539. Maqbool, M.A., et al. Viral Hepatitis 3D-Visualization
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Centrosome amplification causes microcephaly Nat Cell Biol, 2013 Marthiens, V., et al. Cancer Research 3D-Visualization
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Modeling human tumor angiogenesis in a three-dimensional culture system Blood, 2013. 121(21): p. 129-137 Seano, G., et al.  Angiogenesis 3D-Visualization
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Matrix Metalloproteinases Regulate the Formation of Dendritic Spine Head Protrusions during Chemically Induced Long-Term Potentiation PLoS One, 2013. 8(5) Szepesi, Z., et al.. Neurobiology 3D-Visualization
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Particles on the Move: Intracellular Trafficking and Asymmetric Mitotic Partitioning of Nanoporous Polymer Particles. ACS Nano Yan, Y., et al. Nanoparticles 3D-Visualization
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In vivo imaging of CD8+ T cell-mediated elimination of malaria liver stages PNAS, 2013. 110(22): p. 9090-9095 Cockburn, I.A., et al. Immunology 3D Visualization
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Motile invaded neutrophils in the small intestine of Toxoplasma gondii-infected mice reveal a potential mechanism for parasite spread PNAS, 2013. 110(21) Coombes, J.L., et al. Immunology 3D Visualization
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Elimination of Self-Reactive T Cells in the Thymus: A Timeline for Negative Selection PLoS Biol, 2013. 11(5) Dzhagalov, I.L., et al. Immunology 3D Visualization
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ADAM-10 and -17 regulate endometriotic cell migration via concerted ligand and receptor shedding feedback on kinase signaling PNAS, 2013. 110(22) Miller, M.A., et al. Biological Engineering 3D Visualization
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An E3-14.7K Peptide that Promotes Microtubules-Mediated Transport of Plasmid DNA Increases Polyplexes Transfection Efficiency Small, 2013 Pigeon, L., et al. DNA nanoparticles 3D Visualization
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Chemokine Receptor CXCR6-Dependent Hepatic NK T Cell Accumulation Promotes Inflammation and Liver Fibrosis J. Immunol., 2013. 190 (10): p. 5226-5236 Wehr, A., et al. Immunology 3D Visualization
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Rapid, transient potentiation of dendritic spines in context-induced relapse to cocaine seeking Addiction Biology, 2013 Stankeviciute, N.M., et al. Neuroscience 3D-Visualization
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miR-132/212 Knockout Mice Reveal Roles for These miRNAs in Regulating Cortical Synaptic Transmission and Plasticity PLoS One, 2013. 8(4) Remenyi, J., et al. Neuroscience 3D-Visualization
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Evidence that Doublecortin Is Dispensable for the Development of Adult Born Neurons in Mice PLoS One, 2013. 8(5) Merz, K. and D.C. Lie Neural Stem Cells 3D-Visualization
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Reinstatement of nicotine seeking is mediated by glutamatergic plasticity PNAS, 2013. 110(22): p. 9124-9129 Gipson, C.D., et al. Neuroscience 3D-Visualization
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SEMA3A Signaling Controls Layer-Specific Interneuron Branching in the Cerebellum Current Biology, 2013. 23(10): p. 850-861 Cioni, J.-M., et al. Neurobiology 3D-Visualization
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Coronary Microvascular Pericytes Are the Cellular Target of Sunitinib Malate-Induced Cardiotoxicity Science Translational Medicine, 2013. 5(187) Chintalgattu, V., et al. Physiology 3D Visualization
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Multiplex Profiling of Cellular Invasion in 3D Cell Culture Models PLoS One, 2013. 8(5) Burgstaller, G., et al. Pneumology 3D Visualization
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Additional 69 Publications

April


TitleJournalAuthorResearchCategoryArticle
Exposure of silver-nanoparticles and silver-ions to lung cells in vitro at the air-liquid interface Part Fibre Toxicol, 2013. 10: p. 11 Herzog, F., et al. Nanoparticles 3D-Visualization
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Opposing chemokine gradients control human thymocyte migration in situ J Clin Invest, 2013. 123(5): p. 2131-42 Halkias, J., et al. Immunology 3D Visualization
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Rgs13 Constrains Early B Cell Responses and Limits Germinal Center Sizes PLoS One, 2013. 8(3) Hwang, I.Y., et al. Immunology 3D Visualization
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In Vitro Model of Tumor Cell Extravasation PLoS One, 2013. 8(2) Jeon, J.S., et al. Mechanical Engineering 3D Visualization
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Sphingosine-1-phosphate-mediated osteoclast precursor monocyte migration is a critical point of control in antibone-resorptive action of active vitamin D PNAS, 2013. 110(17): p. 7009-7013 Kikuta, J., et al. Immunology 3D Visualization
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Role of CX3CR1 Receptor in Monocyte/Macrophage Driven Neovascularization PLoS One, 2013. 8(2) Kumar, A.H.S., et al. Vascular Biology 3D-Visualization
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A combination of fluorescent NFAT and H2B sensors uncovers dynamics of T cell activation in real time during CNS autoimmunity Nat Med, 2013 Lodygin, D., et al. Neuroimmunology 3D Visualization
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Three Phases of CD8 T Cell Response in the Lung Following H1N1 Influenza Infection and Sphingosine 1 Phosphate Agonist Therap PLoS One, 2013. 8(3) Matheu, M.P., et al. Immunology  3D Visualization
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A Novel 3D Fibril Force Assay Implicates Src in Tumor Cell Force Generation in Collagen Networks PLoS One, 2013. 8(3). Polackwich, R.J., et al. Cancer Research 3D Visualization
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A complete three-dimensional reconstruction of the myoanatomy of Loricifera: comparative morphology of an adult and a Higgins larva stage Frontiers in Zoology, 2013. 10(1): p. 1-21 Neves, R., et al. Zoology 3D-Visualization
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A novel KIT-deficient mouse mast cell model for the examination of human KIT-mediated activation responses J. Immunol. Methods, 2013. 390(1–2): p. 52-62 Smrž, D., et al. Immunology  3D-Visualization
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Deciphering the mechanisms of cellular uptake of engineered nanoparticles by accurate evaluation of internalization using imaging flow cytometry Particle and Fibre Toxicology, 2013. 10(1): p. 1-16 Vranic, S., et al. Nanoparticles  3D-Visualization
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Cerebellar Output in Zebrafish: An Analysis of Spatial Patterns and Topography in Eurydendroid Cell Projections Front Neural Circuits, 2013. 7 Heap, L.A., et al. Neuroscience 3D-Visualization
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Regulation of Spine Density and Morphology by IQGAP1 Protein Domains PLoS One, 2013. 8(2) Jausoro, I., et al. Neuroscience  3D-Visualization
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Norepinephrine modulates the motility of resting and activated microglia via different adrenergic receptors  J. Biol. Chem., 2013 Gyoneva, S. and S.F. Traynelis Pharmacology 3D Visualization
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Internalization of Met Requires the Co-Receptor CD44v6 and Its Link to ERM Proteins PLoS One, 2013. 8(4). Hasenauer, S., et al. Toxicolog 3D Visualization
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Eisosome distribution and localization in the meiotic progeny of Aspergillus nidulans Fungal Genetics and Biology, 2013. 53(0): p. 84-96 Athanasopoulos, A., et al. Molecular Genetics 3D Visualization
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Connexin 30 Expression and Frequency of Connexin Heterogeneity in Astrocyte Gap Junction Plaques Increase with Age in the Rat Retina PLoS One, 2013. 8(3) Mansour, H., et al. Anatomy 3D Visualization
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Neural Markers Reveal a One-Segmented Head in Tardigrades (Water Bears) PLoS One, 2013. 8(3) Mayer, G., et al., Stem Cells 3D Visualization
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Abstract
Dynamic Imaging of Marrow-Resident Granulocytes Interacting with Human Mesenchymal Stem Cells upon Systemic Lipopolysaccharide Challenge Stem Cells Int Myers, J.T., D.S. Barkauskas, and A.Y. Huang Hematology 3D Visualization
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Transgenesis and imaging in birds, and available transgenic reporter lines. Development, Growth & Differentiation  Sato, Y. and R. Lansford Embryogenesis 3D Visualization
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The Adhesion-GPCR BAI1 Regulates Synaptogenesis by Controlling the Recruitment of the Par3/Tiam1 Polarity Complex to Synaptic Sites J. Neurosci., 2013. 33(16): p. 6964-6978 Duman, J.G., et al. Neuroscience 3D Visualization
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Advancement of the 10-species subgingival Zurich Biofilm model by examining different nutritional conditions and defining the structure of the in vitro biofilms BMC Microbiology, 2013. 12(1): p. 1-13. Ammann, T., R. Gmür, and T. Thurnheer Oral Biology 3D-Visualization Abstract
Structural and molecular interrogation of intact biological systems Nature, 2013 Chung, K., et al. Neuroscience 3D-Visualization
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Heterogenic Final Cell Cycle by Chicken Retinal Lim1 Horizontal Progenitor Cells Leads to Heteroploid Cells with a Remaining Replicated Genome PLoS One, 2013. 8(3) Shirazi Fard, S., et al. Neuroscience  3D-Visualization
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Disruption of Arp2/3 Results in Asymmetric Structural Plasticity of Dendritic Spines and Progressive Synaptic and Behavioral Abnormalities J. Neurosci., 2013. 33(14): p. 6081-6092 Kim, I.H., et al. Neuroscience  3D Visualization
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Additional 92 Publications

March


TitleJournalAuthorResearchCategoryArticle
Shigella impairs T lymphocyte dynamics in vivo PNAS, 110(12): p. 4458-4463 Salgado-Pabon, W., et al. Immunology 3D Visualization
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Abstract
Constitutive Lymphocyte Transmigration across the Basal Lamina of High Endothelial Venules Is Regulated by the Autotaxin/Lysophosphatidic Acid Axis J. Immunol., 190(5): p. 2036-2048 Bai, Z., et al. Immunology 3D-Visualization
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Hydroxyurea Exposure Triggers Tissue-Specific Activation of p38 Mitogen-Activated Protein Kinase Signaling and the DNA Damage Response in Organogenesis-Stage Mouse Embryos Toxicol. Sci Banh, S. and B.F. Hales Pharmacology 3D-Visualization
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Expression of the voltage-gated potassium channel subunit Kv1.1 in embryonic zebrafish Mauthner cell Neuroscience Letters, 539(0): p. 54-59 Brewster, D.L. and D.W. Ali Neuroscience 3D-Visualization
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The Involvement of Collagen Triple Helix Repeat Containing 1 in Muscular Dystrophies American J. Pathology, 182(3) Spector, I., et al. Pathology  3D-Visualization
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Spatiotemporal disorder in the axial skeleton development of the Mesp2-null mouse: A model of spondylocostal dysostosis and spondylothoracic dysostosis Bone, 53(1): p. 248-258 Makino, Y., et al. Dental Sciences 3D-Visualization
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The hemolymph vascular system in Cupiennius salei (Araneae: Ctenidae) J. Comparative Zoology, 252(1): p. 76-87 Huckstorf, K., et al. Zoology 3D-Visualization
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NRP1 acts cell autonomously in endothelium to promote tip cell function during sprouting angiogenesis Blood, 121(12): p. 2352-2362 Fantin, A., et al. Developmental Biology 3D-Visualization
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The ETS domain transcriptional repressor Anterior open inhibits MAP kinase and Wingless signaling to couple tracheal cell fate with branch identity Development, 140(6): p. 1240-1249 Caviglia, S. and S. Luschnig Developmental Biology 3D-Visualization
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Purkinje Cell Ataxin-1 Modulates Climbing Fiber Synaptic Input in Developing and Adult Mouse Cerebellum J. Neurosci., 33(13): p. 5806-5820 Ebner, B.A., et al. Neuroscience 3D Visualization
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Bcl-2 associated athanogene 5 (Bag5) is overexpressed in prostate cancer and inhibits ER-stress induced apoptosis BMC Cancer, 13(1): 96 Bruchmann, A., et al. Cancer Research 3D Visualization
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Relapse Induced by Cues Predicting Cocaine Depends on Rapid, Transient Synaptic Potentiation Neuron, 77(5): p. 867-872 Gipson, Cassandra D., et al. Neuroscience 3D-Visualization
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Odorant Response Properties of Individual Neurons in an Olfactory Glomerular Module Neuron, 2013. 77(6): p. 1122-1135 Kikuta, S., et al. Neuroscience  3D-Visualization
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Three-dimensional photolithographic micropatterning: a novel tool to probe the complexities of cell migration Integrative Biology Hoffmann, J.C. and J.L. West Bioengineering 3D Visualization
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Additional 68 Publications

February

TitleJournalAuthorResearchCategoryArticle
Tetraspanin CD37 contributes to the initiation of cellular immunity by promoting dendritic cell migration European J. Immunology Gartlan, K.H., et al. Immunology 3D Visualization
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Brain-Derived Neurotrophic Factor Promotes Vasculature-Associated Migration of Neuronal Precursors toward the Ischemic Striatum PLoS One, 8(1) Grade, S., et al. Neuroscience 3D Visualization
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A novel FoxD3 gene trap line reveals neural crest precursor movement and a role for FoxD3 in their specification Developmental Biology, 2013. 374(1): 1-11 Hochgreb-Hägele, T. and M.E. Bronner Developmental Biology 3D Visualization
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Motility of astrocytic mitochondria is arrested by Ca2+-dependent interaction between mitochondria and actin filaments Cell Calcium, 2013. 53(2): p. 85-93 Kremneva, E., et al., Neuroscience  3D Visualization
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Abstract 
Regulated tissue fluidity steers zebrafish body elongation Development,  140(3): 573-582 Lawton, A.K., et al. Developmental Biology 3D Visualization
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Evidence for dynamic rearrangements but lack of fate or position restrictions in premigratory avian trunk neural crest Development, 140(4): 820-830 McKinney, M.C., et al. Developmental Biology 3D Visualization
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Abstract 
Impact of membrane bioreactor operating conditions on fouling behavior of reverse osmosis membranes in MBR–RO processes Desalination,  311(0): 37-45 Wu, B., Bing, et al. Membrane Technology 3D Visualization Abstract 
Taurine Regulation of Blood Pressure and Vasoactivity Advances in Exp. Medicine and Biology, 407-425 Idrissi, A., et al. Developmental Neuroscience 3D-Visualization
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Engineering of functional, perfusable 3D microvascular networks on a chip Lab on a Chip Kim, S., et al. Mechanical Engineering 3D-Visualization
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Abstract 
Long-term three-dimensional neural tissue cultures in functionalized self-assembling peptide hydrogels, Matrigel and Collagen I Acta Biomaterialia, 9(2): 5162-5169 Koutsopoulos, S. and S. Zhang Biomedical Engineering 3D-Visualization
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Nerve Growth Factor Stimulates Cardiac Regeneration via Cardiomyocyte Proliferation in Experimental Heart Failure PLoS One, 7(12) Lam, N.T., et al. Regenerative Medicine 3D-Visualization
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Endocan Is Upregulated on Tumor Vessels in Invasive Bladder Cancer Where It Mediates VEGF-A-Induced Angiogenesis Cancer Res., 2013. 73(3): p. 1097-1106 Roudnicky, F., et al. Cancer Research  3D-Visualization
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Abstract 
Improving spinning disk confocal microscopy by preventing pinhole cross-talk for intravital imaging PNAS, 110(9): 3399-3404 Shimozawa, T., et al., Developmental Biology  3D-Visualization
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Abstract 
Three-Dimensional Imaging of Prox1-EGFP Transgenic Mouse Gonads Reveals Divergent Modes of Lymphangiogenesis in the Testis and Ovary PLoS One, 7(12) Svingen, T., et al. Genetics and Development 3D-Visualization
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Regional distribution of 5a-reductase type 2 in the adult rat brain: An immunohistochemical analysi Psychoneuro endocrinol., 38(2): p. 281-293 Castelli, M.P., et al. Neuroscience 3D Visualization
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Sustained Ocular Hypertension Induces Dendritic Degeneration of Mouse Retinal Ganglion Cells That Depends on Cell Type and Location Invest. Ophthalmol. Vis. Sci., 2013. 54(2): 1106-1117 Feng, L., et al. Ophthalmology  3D-Visualization
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RNA-binding protein Sam68 controls synapse number and local {beta}-actin mRNA metabolism in dendrites PNAS, 110(8): 3125-3130 Klein, M.E., et al., Neuroscience 3D-Visualization
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Natural and Drug Rewards Act on Common Neural Plasticity Mechanisms with {Delta}FosB as a Key Mediator J. Neurosci., 33(8): 3434-3442 Pitchers, K.K., et al., Neuroscience  3D-Visualization
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A Specialized MicrovasculaDomain in the Mouse Neural Stem Cell Niche PLoS One, 2013. 8(1) Culver, J.C., T.J. Vadakkan, and M.E. Dickinson Neuroscience  3D-Visualization
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Anatomically Restricted Synergistic Antiviral Activities of Innate and Adaptive Immune Cells in the Skin Cell Host & Microbe, 13(2): 155-168 Hickman, Heather D., et al. Infectious Diseases 3D Visualization
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Host DNA released in response to aluminum adjuvant enhances MHC class II-mediated antigen presentation and prolongs CD4 T-cell interactions with dendritic cells PNAS McKee, A.S., et al. Immunology  3D Visualization
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Additional 77 Publications 

January


TitleJournalAuthorResearchCategoryArticle
CD8+ Tumor-Infiltrating T Cells Are Trapped in the Tumor-Dendritic Cell Network12 Neoplasia, 2013. 15(1): p. 85-94 Boissonnas, A., et al. Cancer Research 3D Visualization
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Molecular and functional evidence of HCN4 and caveolin-3 interaction during cardiomyocyte differentiation from human embryonic stem cells Stem Cells and Development, 2013 Bosman, A., et al. Immunology  3D-Visualization
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Prevalent coordination of mitochondrial DNA transcription and initiation of replication with the cell cycl Nucleic Acids Res., 2013 Chatre, L. and M. Ricchetti Genetics  3D-Visualization
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Perivascular Mast Cells Dynamically Probe Cutaneous Blood Vessels to Capture Immunoglobulin Immunity, 2013. 38(1): p. 166-175 Cheng, Laurence E., et al. Immunology 3D-Visualization
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Keratins and lipids in ethnic hair Intern. J. Cosmetic Science Cruz, C.F., et al., Biological Engineering 3D-Visualization
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Three-Dimensional Visualization of the Mouse Thymus Organization in Health and Immunodeficiency J. Immunol., 2013. 190(2): p. 586-596 Irla, M., et al. Immunology  3D-Visualization
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Selective Ablation of Pillar and Deiters' Cells Severely Affects Cochlear Postnatal Development and Hearing in Mice J. Neurosci., 2013. 33(4): p. 1564-1576 Mellado Lagarde, M.M., et al. Neuroscience 3D-Visualization
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Intravitreal injection of erythropoietin protects against retinal vascular regression at the early stage of diabetic retinopathy in streptozotocin-induced diabetic rats Experimental Eye Research, 2013. 106(0): p. 64-73 Mitsuhashi, J., et al.,  Ophthalmology 3D-Visualization
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Novel 3D analysis of Claudin-5 reveals significant endothelial heterogeneity among CNS microvessels Microvascular Research Paul, D., et al. Blood-Brain Barrier 3D-Visualization
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The early mouse 3D osteocyte network in the presence and absence of mechanical loading Bone, 2013. 52(1): p. 189-196 Sugawara, Y., et al. Orthodontics 3D-Visualization
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New Modules Are Added to Vibrissal Premotor Circuitry with the Emergence of Exploratory Whisking Neuron, 2013. 77(2): p. 346-360 Takatoh, J., et al. Neuroscience  3D-Visualization
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Increased neuronal activity fragments the Golgi complex PNAS, 2013. 110(4): p. 1482-1487 Thayer, D.A., Y.N. Jan, and L.Y. Jan Golgi complex 3D-Visualization
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Functional Free-Standing Graphene Honeycomb Films Advanced Functional Materials Yin, S., et al. Membrane Science 3D-Visualization
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VEGF over-expression in skeletal muscle induces angiogenesis by intussusception rather than sprouting Angiogenesis, 2013. 16(1): p. 123-136 Gianni-Barrera, R., et al. Anatomy 3D-Visualization  Abstract 
Fluorescent oxygen sensitive microbead incorporation for measuring oxygen tension in cell aggregates Biomaterials, 2013. 34(4): p. 922-929 Lambrechts, D., et al. Materials Engineering 3D-Visualization  Abstract 
Disrupted ATP synthase activity and mitochondrial hyperpolarisation-dependent oxidative stress is associated with p66Shc phosphorylation in fibroblasts of NARP patients. Internat. J. Biochem.& Cell Biology, 45(1): 141-150 Lebiedzinska, M., et al.
 
Pathology 3D-Visualization  Abstract 
Flow analysis and fouling on the patterned membrane surface J. Membrane Science, 2013. 427(0): p. 320-325 Lee, Y.K., et al. Chemical Engineering 3D-Visualization  Abstract 
Effects of shear rate on biofouling of reverse osmosis membrane during tertiary wastewater desalination J. Membrane Science, 2013. 427(0): p. 390-398 Ying, W., et al. Environmental Engineering 3D-Visualization  Abstract 
Enhanced Recruitment of Endosomal Na+/H+ Exchanger NHE6 into Dendritic Spines of Hippocampal Pyramidal Neurons during NMDA Receptor-Dependent Long-Term Potentiation J. Neurosci., 2013. 33(2): p. 595-610 Deane, E.C., et al. Neuroscience 3D Visualization
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Spatial association with PTEX complexes defines regions for effector export into Plasmodium falciparum-infected erythrocytes Nat Commun, 2013. 4: p. 1415 Riglar, D.T., et al. Medical Biology 3D Visualization
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Abstract 
Rotational motion during three-dimensional morphogenesis of mammary epithelial acini relates to laminin matrix assembly PNAS, 2013. 110(1): p. 163-8. Wang, H., et al. Cancer Research  3D Visualization
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A novel multistep mechanism for initial lymphangiogenesis in mouse embryos based on ultramicroscopy EMBO J Hagerling, R., et al. Vascular Cell Biology  3D-Visualization
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Microglia emerge from erythromyeloid precursors via Pu.1- and Irf8-dependent pathways Nat Neurosci Kierdorf, K., et al. Neuroscience  3D-Visualization
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Quantifying Nerve Architecture in Murine and Human Airways Using Three-Dimensional Computational Mapping Am. J. Respir. Cell Mol. Biol., 2013. 4 (1): p. 10-16 Scott, G.D., A.D. Fryer, and D.B. Jacoby Pulmonary Research  3D-Visualization
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Quantifying the transcriptional output of single alleles in single living mammalian cells Nat. Protocols, 2013. 8(2): p. 393-408 Yunger, S., et al. Nanotechnology 3D-Visualization
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Additional 69 Publications

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